PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 1435aa    MW: 165379 Da    PI: 7.7605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07207226625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G+rC++ H
  XP_012575300.1 207 CPFHLKTGACRFGERCSRVH 226
                     ******************99 PP

2zf-CCCH27.36.4e-09336363126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++G  tC++G  C+F+H+
  XP_012575300.1 336 WKVAICGEYMKSGykTCSHGTACNFIHC 363
                     899************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.465201229IPR000571Zinc finger, CCCH-type
SMARTSM003560.99202228IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5207226IPR000571Zinc finger, CCCH-type
PRINTSPR018481.2E-34207226IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.2E-34226246IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010210.48233333IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.3E-23233331IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125403.57E-48234332No hitNo description
SMARTSM003612.8E-4261329IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018481.2E-34262277IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549282.86E-14265333IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.2E-34290312IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.2E-34317341IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.502335365IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025335364IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6336363IPR000571Zinc finger, CCCH-type
PRINTSPR018481.2E-34355367IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.200.201.4E-35760820No hitNo description
SuperFamilySSF561122.56E-918681166IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.4E-35868983No hitNo description
CDDcd078402.97E-1388741158No hitNo description
PROSITE profilePS5001145.228741158IPR000719Protein kinase domain
PfamPF000695.2E-698741158IPR000719Protein kinase domain
SMARTSM002207.7E-908741158IPR000719Protein kinase domain
PROSITE patternPS001070880903IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.109.2E-549841182No hitNo description
PROSITE patternPS0010809941006IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0006468Biological Processprotein phosphorylation
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1435 aa     Download sequence    Send to blast
MGMEEESERK REVGSRKEKR KAAKKMRRKK RRQENAEMAR LEEEARLNDP EEQRKMLLLE  60
QQEAERMQRD RIAFEESERA WMIKHQLLLQ QQLEDADNNN NNNNNNNNNN NNNGVEEEES  120
EKEEDEDDGP PEIIWRGNEI IIKKKKKKAN SLLQRHQEHH ECDSNNRPTS NPFPPESPSQ  180
PHSNSPTLEN VAQQLPNFGT ELDKAHCPFH LKTGACRFGE RCSRVHFYPD KSSTLLIKNM  240
YNGPGLAWEQ DEGLEYTEEE VEFCFKEFYD DVHTEFLKFG ELVNFKVCKN GSFHLRGNVY  300
VQYKLLDSAL RAYNSVNGRY FAGKQVSCKF VNLTRWKVAI CGEYMKSGYK TCSHGTACNF  360
IHCFRNPGGD YEWADSDKPP PNFWVKQMAA LFGHSDDYEI SRVHGNLCVL NPSSNVSKTD  420
SDRYHSRRSR SRELGQLNGG RSGRRIQEDE KKQRTPDEER NTNHKRKCRN GTPDTDTEWS  480
EEVDREKYHE HTRESSFNRN RDDDSRRHEE YSDVNWVNRD SEKQHDRKGR SSRKWNQDSR  540
DWIYEAGSDE DRVRRRHHSS QRKGSRHQSR DNRNRTDESE SDEDRAHEEY SDVDWDTTIR  600
HHENQHDEKG RNSQIYETES DEDRHRKRYY RSQMKEARHR SRDNSYVTDE SESDKDREME  660
TQHNYSRKKS RHKRSGLQDY RKDCDNENDK VDGDWSQGES DPQAHHHKKK RFHIWSTPGS  720
EFLSFQQQFV ISFGDLSIGI GKSANEYVAE NHRRELKAKR SSSSSKHLIV NNNNNNNNDA  780
TTHLISNTYR DSSDENENEN ENENNASEKV VSKRIITTTS TTTTTTTTSS VSVGVISKGF  840
QIKSSLVVAG WPSWLTAVAG EAISGWIPRR ADSFHKLDKI GQGTYSSVYR ARDLETNKIV  900
ALKKVKFANI DPESVRFMAR EIILLRRLDH PNVMKLQGMI TSTLSGSLYL IFEYMDHDLS  960
GLAAIPGVNF TQPQIKCYMQ QLLRGLEHCH SRGVMHRDIK GSNLLLDNNG NLKIADFGLA  1020
TSFQPSQEQP LTSRVVTLWY RPPELLLGAT SYGVAVDLWS AGCILAELFA GKPIMPGRTE  1080
VEQLHKIFKL CGSPSEDYWK KSKLPHATIF KPQQPYKRVV SETFKDFPSS ALSLLEVLLA  1140
IEPKDRGTAS STLQNEFFTS NPLPCDPTTL PKYPPSKELD VKFREEDARR RRTANKGHGQ  1200
ESVGRNFKES KVVPAPEANV NFQASIEKRQ GQCNSKCVSE KYNPEEEGGY GFPLGPVKSK  1260
AQNIFSHSGQ SMHPSAYGSS CNMNLRGEDV LIGPDRVFTS RNSELRKQNS YWHGSTAKLS  1320
RFSNSVAVRG DSRFDMSGDC SLNSQWQEDH FDMRYSHLAN GESSQLLDGT KHSRKEEFHL  1380
LGKDRSMGYA SKNSHLNFSG PLLPSDDDLE EILKEHERQI QQAVRKARLN KKAGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4nst_A2e-8286011971342Cyclin-dependent kinase 12
4nst_C2e-8286011971342Cyclin-dependent kinase 12
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1829RKREVGSRKEKRKAAKKMRRKK
2830RKREVGSRKEKRKAAKKMRRKKR
31532RKEKRKAAKKMRRKKRRQ
41629KEKRKAAKKMRRKK
52331KKMRRKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405491e-149AC140549.12 Medicago truncatula clone mth2-28o14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575300.10.0PREDICTED: uncharacterized protein LOC101495256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-133C3H family protein